Books

Data visualization using R (optional)

Clicking on the covers will send you to the free online versions of each book

Of partcular interest to us will be chapters on HTML documents and HTML Presentations

ggplot2 reference: The definitive guide to ggplot2. Check out the pages for the different functions for great examples
R graph gallery: Example-filled site for different R-based graphs, specially in ggplot. The ads can be a bit irritating, but the content is great.
htmlwidgets for R: Reference and gallery for different Javascript interactive graphics libraries that have been ported to R
Bioinformatics-related
- Bioconductor packages for visualization -heatmaply: R package for interactive heatmaps
- manhattanly: R package for interactive Manhattan plots
- Graphics chapter from Modern Statistics for Modern Biology by Holmes and Huber

Bioinformatics-related
- RNAseq analysis in R
- GEN 242 course website from University of California Riverside
- RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR: Open review paper on using R for RNA-seq analysis
- Analysis of single cell RNA-seq data from Hember lab

Flowing Data: This is one of my favorite sites for learning data viz. There are several tutorials in R for different graphics, as well as other languages. Nathan Yau, who runs the website, also has 2 excellent books on data viz, as well as a few self-guided courses for data viz in R.
JunkCharts: Critiques of chartjunk + junk art
I want hue: Colors for data scientists

ggplot2 reference: The definitive guide to ggplot2. Check out the pages for the different functions for great examples
ggplot2 cheatsheet
Cheatsheets from the R-Graph Gallery
Themes to improve your ggplot figures